95. | REPという反復配列:REPtronとRAYT | 全文(PDF)/紹介論文▼ | 2014/05/07 |
| keywords: REP, BIME, REPtron, RAYT, Y1 transposase, IS200/US605, TIRtron |
|
- Nunvar J, Huckova T, Licha I. Identification and characterization of repetitive extragenic palindromes (REP)-associated tyrosine transposases: implications for REP evolution and dynamics in bacterial genomes.
BMC Genomics. 2010 Jan 19;11:44. doi: 10.1186/1471-2164-11-44.
- Bertels F, Rainey PB.
Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria.
PLoS Genet. 2011 Jun;7(6):e1002132. doi:10.1371/journal.pgen.1002132. Epub 2011 Jun 16.
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Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences.
Nucleic Acids Res. 2012 Apr;40(8):3596-609. doi: 10.1093/nar/gkr1198. Epub 2011 Dec 22.
- Messing SA, Ton-Hoang B, Hickman AB, McCubbin AJ, Peaslee GF, Ghirlando R, Chandler M, Dyda F.
The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease.
Nucleic Acids Res. 2012 Oct;40(19):9964-79. doi: 10.1093/nar/gks741. Epub 2012 Aug 9.
- Di Nocera PP, De Gregorio E, Rocco F.
GTAG- and CGTC-tagged palindromic DNA repeats in prokaryotes.
BMC Genomics. 2013 Jul 31;14:522. doi: 10.1186/1471-2164-14-522.
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94. | ウイルスに寄生するウイルスとプラスミド: virophage, transpoviron | 全文(PDF)/紹介論文▼ | 2014/05/02 |
| keywords: virophage, transpoviron, mimivirus, Polinton |
|
- La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D.
The virophage as a unique parasite of the giant mimivirus.
Nature. 2008 Sep 4;455(7209):100-4. doi: 10.1038/nature07218.
- Fischer MG, Suttle CA.
A virophage at the origin of large DNA transposons.
Science. 2011 Apr 8;332(6026):231-4. doi: 10.1126/science.1199412. Epub 2011 Mar 3.
- Yau S, Lauro FM, DeMaere MZ, Brown MV, Thomas T, Raftery MJ, Andrews-Pfannkoch C, Lewis M, Hoffman JM, Gibson JA, Cavicchioli R.
Virophage control of antarctic algal host-virus dynamics.
Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6163-8. doi: 10.1073/pnas.1018221108. Epub 2011 Mar 28.
- Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D.
Provirophages and transpovirons as the diverse mobilome of giant viruses.
Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):18078-83. doi: 10.1073/pnas.1208835109. Epub 2012 Oct 15.
- Yutin N, Raoult D, Koonin EV.
Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies.
Virol J. 2013 May 23;10:158. doi: 10.1186/1743-422X-10-158.
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93. | HDV型リボザイムとNon-LTR retrotransposon | 全文(PDF)/紹介論文▼ | 2014/02/10 |
| keywords: HDV, ribozyme, non-LTR retrotransposon, IRES, R2, L1Tc |
|
- Webb CH, Riccitelli NJ, Ruminski DJ, Lupták A.
Widespread occurrence of self-cleaving ribozymes.
Science. 2009 Nov 13;326(5955):953. doi: 10.1126/science.1178084.
- Eickbush DG, Eickbush TH.
R2 retrotransposons encode a self-cleaving ribozyme for processing from an rRNA cotranscript.
Mol Cell Biol. 2010 Jul;30(13):3142-50. doi: 10.1128/MCB.00300-10. Epub 2010 Apr 26.
- Sánchez-Luque FJ, López MC, Macias F, Alonso C, Thomas MC.
Identification of an hepatitis delta virus-like ribozyme at the mRNA 5'-end of the L1Tc retrotransposon from Trypanosoma cruzi.
Nucleic Acids Res. 2011 Oct;39(18):8065-77. doi: 10.1093/nar/gkr478. Epub 2011 Jun 30.
- Ruminski DJ, Webb CH, Riccitelli NJ, Lupták A.
Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes.
J Biol Chem. 2011 Dec 2;286(48):41286-95. doi: 10.1074/jbc.M111.297283. Epub 2011 Oct 12.
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92. | 結晶構造から見るY1 transposase: IS608, SSO1474, ISDra2 | 全文(PDF)/紹介論文▼ | 2014/01/29 |
| keywords: Y1 transposase, IS200/605 |
|
- Ronning DR, Guynet C, Ton-Hoang B, Perez ZN, Ghirlando R, Chandler M, Dyda F.
Active site sharing and subterminal hairpin recognition in a new class of DNA transposases.
Mol Cell. 2005 Oct 7;20(1):143-54.
- Lee HH, Yoon JY, Kim HS, Kang JY, Kim KH, Kim DJ, Ha JY, Mikami B, Yoon HJ, Suh SW.
Crystal structure of a metal ion-bound IS200 transposase.
J Biol Chem. 2006 Feb 17;281(7):4261-6. Epub 2005 Dec 11.
- Hickman AB, James JA, Barabas O, Pasternak C, Ton-Hoang B, Chandler M, Sommer S, Dyda F.
DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans.
EMBO J. 2010 Nov 17;29(22):3840-52. doi: 10.1038/emboj.2010.241. Epub 2010 Oct 1.
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91. | 泡沫候補ではない?:Endogenous foamy viruses | 全文(PDF)/紹介論文▼ | 2013/03/01 |
| keywords: endogenous retrovirus, foamy virus, spumavirus |
|
- Katzourakis A, Gifford RJ, Tristem M, Gilbert MT, Pybus OG.
Macroevolution of complex retroviruses.
Science. 2009 Sep 18;325(5947):1512.
- Han GZ, Worobey M.
An endogenous foamy virus in the aye-aye (Daubentonia madagascariensis).
J Virol. 2012 Jul;86(14):7696-8. Epub 2012 May 9.
- Han GZ, Worobey M.
An endogenous foamy-like viral element in the coelacanth genome.
PLoS Pathog. 2012 Jun;8(6):e1002790.
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90. | リボソーム RNA 遺伝子の増幅と転移因子由来タンパク質 Fob1 | 全文(PDF)/紹介論文▼ | 2011/06/10 |
| keywords: ribosomal RNA, rDNA, fob1, copy number, transcription, integrase |
|
- Kobayashi T, Horiuchi T.
A yeast gene product, Fob1 protein, required for both replication fork blocking and recombinational hotspot activities.
Genes Cells. 1996 May;1(5):465-474.
- Kobayashi T, Heck DJ, Nomura M, Horiuchi T.
Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I.
Genes Dev. 1998 Dec 15;12(24):3821-3830.
- Takeuchi Y, Horiuchi T, Kobayashi T.
Transcription-dependent recombination and the role of fork collision in yeast rDNA.
Genes Dev. 2003 Jun 15;17(12):1497-1506.
- Kobayashi T.
The replication fork barrier site forms a unique structure with Fob1p and inhibits the replication fork.
Mol Cell Biol. 2003 Dec;23(24):9178-9188.
- Gao X, Voytas DF.
A eukaryotic gene family related to retroelement integrases.
Trends Genet. 2005 Mar;21(3):133-137.
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89. | 転移因子の転写と複製の状態をSETする:ATXR5とATXR6 | 全文(PDF)/紹介論文▼ | 2011/04/20 |
| keywords: SET domain, histone H3, H3K27 methylation |
|
- Jacob Y, Feng S, LeBlanc CA, Bernatavichute YV, Stroud H, Cokus S, Johnson LM, Pellegrini M, Jacobsen SE, Michaels SD.
ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing.
Nat Struct Mol Biol. 2009 Jul;16(7):763-8. Epub 2009 Jun 7.
- acob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE.
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases.
Nature. 2010 Aug 19;466(7309):987-91. Epub 2010 Jul 14.
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88. | 家畜の家畜化された転移酵素:ZBED6/MGR | 全文(PDF)/紹介論文▼ | 2011/04/10 |
| keywords: ZBED6, MGR, hAT, transposase, IGF2 |
|
- Markljung E, Jiang L, Jaffe JD, Mikkelsen TS, Wallerman O, Larhammar M, Zhang X, Wang L, Saenz-Vash V, Gnirke A, Lindroth AM, Barres R, Yan J, Stromberg S, De S, Ponten F, Lander ES, Carr SA, Zierath JR, Kullander K, Wadelius C, Lindblad-Toh K, Andersson G, Hjalm G, Andersson L.
ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth.
PLoS Biol. 2009 Dec;7(12):e1000256. Epub 2009 Dec 15.
- Butter F, Kappei D, Buchholz F, Vermeulen M, Mann M.
A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth.
EMBO Rep. 2010 Apr;11(4):305-11. Epub 2010 Feb 5.
|
87. | 性転換機構の転換:HO、α3 | 全文(PDF)/紹介論文▼ | 2011/03/30 |
| keywords: sex, homing endonuclease, MuDR, transposase |
|
- Barsoum E, Martinez P, Astrom SU.
Alpha3, a transposable element that promotes host sexual reproduction.
Genes Dev. 2010 Jan 1;24(1):33-44. Epub 2009 Dec 15.
- Rusche LN, Rine J.
Switching the mechanism of mating type switching: a domesticated transposase supplants a domesticated homing endonuclease.
Genes Dev. 2010 Jan 1;24(1):10-4.
|
86. | イントロンとホーミングエンドヌクレアーゼはどう出会った? | 全文(PDF)/紹介論文▼ | 2011/03/10 |
| keywords: self-splicing intron, homing endonuclease, collaborative homing, phage |
|
- Bonocora RP, Shub DA.
A likely pathway for formation of mobile group I introns.
Curr Biol. 2009 Feb 10;19(3):223-8. PubMed PMID: 19200727; PubMed Central PMCID: PMC2856452.
- Zeng Q, Bonocora RP, Shub DA.
A free-standing homing endonuclease targets an intron insertion site in the psbA gene of cyanophages.
Curr Biol. 2009 Feb 10;19(3):218-22. PubMed PMID: 19200728.
|
85. | Save Our Ship (SOS):integron、接合プラスミド、ICE | 全文(PDF)/紹介論文▼ | 2011/02/20 |
| keywords: SOS response, integron, integrase, conjugative plasmid, ICE |
|
- Guerin E, Cambray G, Sanchez-Alberola N, Campoy S, Erill I, Da Re S, Gonzalez-Zorn B, Barbe J, Ploy MC, Mazel D.
The SOS response controls integron recombination.
Science. 2009 May 22;324(5930):1034.
- Baharoglu Z, Bikard D, Mazel D.
Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation.
PLoS Genet. 2010 Oct 21;6(10):e1001165.
|
84. | 出“X”記あるいは出“精巣”記:retrogene | 全文(PDF)/紹介論文▼ | 2011/02/10 |
| keywords: retrogene, retrocopy, processed pseudogene, L1, retrotransposition, X chromosome |
|
- Bradley J, Baltus A, Skaletsky H, Royce-Tolland M, Dewar K, Page DC.
An X-to-autosome retrogene is required for spermatogenesis in mice.
Nat Genet. 2004 Aug;36(8):872-6.
- Rohozinski J, Bishop CE.
The mouse juvenile spermatogonial depletion (jsd) phenotype is due to a mutation in the X-derived retrogene, mUtp14b.
Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11695-700.
- Zhao M, Rohozinski J, Sharma M, Ju J, Braun RE, Bishop CE, Meistrich ML.
Utp14b: a unique retrogene within a gene that has acquired multiple promoters and a specific function in spermatogenesis.
Dev Biol. 2007 Apr 15;304(2):848-59.
- Emerson JJ, Kaessmann H, Betrán E, Long M.
Extensive gene traffic on the mammalian X chromosome.
Science. 2004 Jan 23;303(5657):537-40.
- Marques AC, Dupanloup I, Vinckenbosch N, Reymond A, Kaessmann H.
Emergence of young human genes after a burst of retroposition in primates.
PLoS Biol. 2005 Nov;3(11):e357.
- Vinckenbosch N, Dupanloup I, Kaessmann H.
Evolutionary fate of retroposed gene copies in the human genome.
Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3220-5.
- Burki F, Kaessmann H.
Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux.
Nat Genet. 2004 Oct;36(10):1061-3.
|
83. | 転移因子から転写因子へ:DAYSLEEPER, FHY3, and FAR1 | 全文(PDF)/紹介論文▼ | 2011/01/30 |
| keywords: DNA transposon, hAT, MuDR, domestication, transposase, transcription factor |
|
- Bundock P, Hooykaas P.
An Arabidopsis hAT-like transposase is essential for plant development.
Nature. 2005 Jul 14;436(7048):282-4.
- Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H.
Transposase-derived transcription factors regulate light signaling in Arabidopsis.
Science. 2007 Nov 23;318(5854):1302-5. Erratum in: Science. 2007 Dec 21;318(5858):1866.
- Lin R, Teng Y, Park HJ, Ding L, Black C, Fang P, Wang H.
Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction.
Plant Physiol. 2008 Oct;148(2):981-92. Epub 2008 Aug 20.
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82. | 他(TA)者を排除する転移因子と大核形成:PiggyMac, TPB2, and TBE | 全文(PDF)/紹介論文▼ | 2011/01/20 |
| keywords: DNA transposon, ciliate, piggyBac, TBE, macronucleus, micronucleus |
|
- Baudry C, Malinsky S, Restituito M, Kapusta A, Rosa S, Meyer E, Betermier M.
PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia.
Genes Dev. 2009 Nov 1;23(21):2478-83.
- Cheng CY, Vogt A, Mochizuki K, Yao MC.
A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila.
Mol Biol Cell. 2010 May 15;21(10):1753-62. Epub 2010 Mar 31.
- Nowacki M, Higgins BP, Maquilan GM, Swart EC, Doak TG, Landweber LF.
A functional role for transposases in a large eukaryotic genome.
Science. 2009 May 15;324(5929):935-8. Epub 2009 Apr 16.
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81. | Relics of RELIKs:endogenous lentiviruses | 全文(PDF)/紹介論文▼ | 2011/01/10 |
| keywords: endogenous retrovirus, lentivirus |
|
- Katzourakis A, Tristem M, Pybus OG, Gifford RJ.
Discovery and analysis of the first endogenous lentivirus.
Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6261-5. Epub 2007 Mar 23.
- Gifford RJ, Katzourakis A, Tristem M, Pybus OG, Winters M, Shafer RW.
A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution.
Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20362-7. Epub 2008 Dec 15.
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80. | 脊椎動物ゲノムの中のRNAウイルス化石 | 全文(PDF)/紹介論文▼ | 2010/12/23(2011/01/05加筆) |
| keywords: RNA virus, bornavirus, processed pseudogene, reverse transcription |
|
- Horie M, Honda T, Suzuki Y, Kobayashi Y, Daito T, Oshida T, Ikuta K, Jern P, Gojobori T, Coffin JM, Tomonaga K.
Endogenous non-retroviral RNA virus elements in mammalian genomes.
Nature. 2010 Jan 7;463(7277):84-7.
- Belyi VA, Levine AJ, Skalka AM.
Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes.
PLoS Pathog. 2010 Jul 29;6(7):e1001030.
- Katzourakis A, Gifford RJ.
Endogenous viral elements in animal genomes.
PLoS Genet. 2010 Nov 18;6(11):e1001191.
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79. | Non-LTR retrotransposon の group と clade のリスト | 全文(PDF)/紹介論文▼ | 2010/12/13 |
| keywords: non-LTR retrotransposon |
78. | ゾロの傷痕:The Mark of Zorro | 全文(PDF)/紹介論文▼ | 2010/01/09 |
| keywords: non-LTR retrotransposon, L1, Zorro |
|
- Goodwin TJ, Ormandy JE, Poulter RT.
L1-like non-LTR retrotransposons in the yeast Candida albicans.
Curr Genet. 2001 Apr;39(2):83-91. PubMed PMID: 11405100.
- Goodwin TJ, Busby JN, Poulter RT.
A yeast model for target-primed (non-LTR) retrotransposition.
BMC Genomics. 2007 Aug 3;8:263. PubMed PMID: 17683538; PubMed Central PMCID: PMC1965478.
- Dong C, Poulter RT, Han JS.
LINE-like retrotransposition in Saccharomyces cerevisiae.
Genetics. 2009 Jan;181(1):301-11. Epub 2008 Oct 28. PubMed PMID: 18957700; PubMed Central PMCID: PMC2621178.
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77. | 合体してレトロウイルスと戦う:TRIMCyp | 全文(PDF)/紹介論文▼ | 2009/06/16 |
| keywords: retrovirus, TRIM5alpha |
|
- Sayah DM, Sokolskaja E, Berthoux L, Luban J.
Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1.
Nature. 2004 Jul 29;430(6999):569-73. Epub 2004 Jul 7.
- Nisole S, Lynch C, Stoye JP, Yap MW.
A Trim5-cyclophilin A fusion protein found in owl monkey kidney cells can restrict HIV-1.
Proc Natl Acad Sci U S A. 2004 Sep 7;101(36):13324-8. Epub 2004 Aug 23.
- Liao CH, Kuang YQ, Liu HL, Zheng YT, Su B.
A novel fusion gene, TRIM5-Cyclophilin A in the pig-tailed macaque determines its susceptibility to HIV-1 infection.
AIDS. 2007 Dec;21 Suppl 8:S19-26.
- Wilson SJ, Webb BL, Ylinen LM, Verschoor E, Heeney JL, Towers GJ.
Independent evolution of an antiviral TRIMCyp in rhesus macaques.
Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3557-62. Epub 2008 Feb 19.
- Virgen CA, Kratovac Z, Bieniasz PD, Hatziioannou T.
Independent genesis of chimeric TRIM5-cyclophilin proteins in two primate species.
Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3563-8. Epub 2008 Feb 19.
- Brennan G, Kozyrev Y, Hu SL.
TRIMCyp expression in Old World primates Macaca nemestrina and Macaca fascicularis.
Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3569-74. Epub 2008 Feb 19.
- Newman RM, Hall L, Kirmaier A, Pozzi LA, Pery E, Farzan M, O'Neil SP, Johnson W.
Evolution of a TRIM5-CypA splice isoform in old world monkeys.
PLoS Pathog. 2008 Feb 29;4(2):e1000003.
- Stoye JP, Yap MW.
Chance favors a prepared genome.
Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3177-8. Epub 2008 Feb 25.
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76. | 宇宙からの侵略者:SPACE INVADERS | 全文(PDF)/紹介論文▼ | 2009/06/08 |
| keywords: DNA transposon, horizontal transfer |
|
- Pace JK 2nd, Gilbert C, Clark MS, Feschotte C.
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods.
Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17023-8. Epub 2008 Oct 20.
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75. | 原核生物のレトロエレメント:遺伝子の組み合わせを指標に | 全文(PDF)/紹介論文▼ | 2009/05/13 |
| keywords: retroelement, prokaryote, CRISPR/Cas system |
|
- Kojima KK, Kanehisa M.
Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture.
Mol Biol Evol. 2008 Jul;25(7):1395-404. Epub 2008 Apr 7.
- Simon DM, Zimmerly S.
A diversity of uncharacterized reverse transcriptases in bacteria.
Nucleic Acids Res. 2008 Dec;36(22):7219-29. Epub 2008 Nov 12.
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74. | トランスポゾン対レトロトランスポゾン?:CENP-B | 全文(PDF)/紹介論文▼ | 2009/03/23 |
| keywords: DNA transposon, LTR retrotransposon, CENP-B |
|
- Casola C, Hucks D, Feschotte C.
Convergent Domestication of pogo-like Transposases into Centromere-Binding Proteins in Fission Yeast and Mammals.
Mol Biol Evol. 2008 Jan;25(1):29-41.
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Host genome surveillance for retrotransposons by transposon-derived proteins.
Nature. 2008 Jan 24;451(7177):431-6.
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73. | そして誰もいなくなった:ヒトゲノムの中のDNAトランスポゾン | 全文(PDF)/紹介論文▼ | 2009/03/12 |
| |
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- Pace JK 2nd, Feschotte C.
The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage.
Genome Res. 2007 Apr;17(4):422-32.
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72. | Alu RNAのプロセシング:scAlu | 全文(PDF)/紹介論文▼ | 2009/03/05 |
| keywords: SINE, Alu, 7SL RNA |
|
- Maraia RJ, Driscoll CT, Bilyeu T, Hsu K, Darlington GJ.
Multiple dispersed loci produce small cytoplasmic Alu RNA.
Mol Cell Biol. 1993 Jul;13(7):4233-41.
- Shaikh TH, Roy AM, Kim J, Batzer MA, Deininger PL.
cDNAs derived from primary and small cytoplasmic Alu (scAlu) transcripts.
J Mol Biol. 1997 Aug 15;271(2):222-34.
- Sarrowa J, Chang DY, Maraia RJ.
The decline in human Alu retroposition was accompanied by an asymmetric decrease in SRP9/14 binding to dimeric Alu RNA and increased expression of small cytoplasmic Alu RNA.
Mol Cell Biol. 1997 Mar;17(3):1144-51.
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Accurate 3' end processing and adenylation of human signal recognition particle RNA and Alu RNA in vitro.
J Biol Chem. 1998 Dec 25;273(52):35023-31.
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71. | ある(Alu)SINEの来歴 | 全文(PDF)/紹介論文▼ | 2009/03/03 |
| keywords: SINE, Alu, 7SL RNA, FAM, FLAM, FRAM |
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- Quentin Y.
Fusion of a free left Alu monomer and a free right Alu monomer at the origin of the Alu family in the primate genomes.
Nucleic Acids Res. 1992a Feb 11;20(3):487-93.
- Jurka J, Zuckerkandl E.
Free left arms as precursor molecules in the evolution of Alu sequences.
J Mol Evol. 1991 Jul;33(1):49-56.
- Quentin Y.
Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements.
Nucleic Acids Res. 1992b Jul 11;20(13):3397-401.
- Quentin Y.
A master sequence related to a free left Alu monomer (FLAM) at the origin of the B1 family in rodent genomes.
Nucleic Acids Res. 1994 Jun 25;22(12):2222-7.
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Evolutionary history of 7SL RNA-derived SINEs in Supraprimates.
Trends Genet. 2007 Apr;23(4):158-61. Epub 2007 Feb 20. Review.
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Characterization of novel Alu- and tRNA-related SINEs from the tree shrew and evolutionary implications of their origins.
Mol Biol Evol. 2002 Nov;19(11):1964-72.
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The age of Alu subfamilies.
J Mol Evol. 1996 Jan;42(1):59-65.
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70. | テロメラーゼの立体構造 | 全文(PDF)/紹介論文▼ | 2008/12/22 |
| keywords: reverse transcriptase, telomerase |
|
- Jacobs SA, Podell ER, Cech TR.
Crystal structure of the essential N-terminal domain of telomerase reverse transcriptase.
Nat Struct Mol Biol. 2006 Mar;13(3):218-25. Epub 2006 Feb 5.
Erratum in: Nat Struct Mol Biol. 2007 Oct;14(10):984.
- Rouda S, Skordalakes E.
Structure of the RNA-binding domain of telomerase: implications for RNA recognition and binding.
Structure. 2007 Nov;15(11):1403-12.
- Gillis AJ, Schuller AP, Skordalakes E.
Structure of the Tribolium castaneum telomerase catalytic subunit TERT.
Nature. 2008 Oct 2;455(7213):633-7. Epub 2008 Aug 31.
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69. | 転移中間体を元通りに?:ERCC1/XPFとTrex1 | 全文(PDF)/紹介論文▼ | 2008/12/18 |
| keywords: retroelement, non-LTR retrotransposon |
|
- Gasior SL, Roy-Engel AM, Deininger PL.
ERCC1/XPF limits L1 retrotransposition.
DNA Repair (Amst). 2008 Jun 1;7(6):983-9.
- Stetson DB, Ko JS, Heidmann T, Medzhitov R.
Trex1 prevents cell-intrinsic initiation of autoimmunity.
Cell. 2008 Aug 22;134(4):587-98.
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68. | 完全変態昆虫内部の系統関係:NIP法 | 全文(PDF)/紹介論文▼ | 2008/10/21 |
| keywords: intron, phylogeny |
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Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects.
Genome Res. 2006 Nov;16(11):1334-8.
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Near intron positions are reliable phylogenetic markers: an application to holometabolous insects.
Mol Biol Evol. 2008 May;25(5):821-30.
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67. | ナノ古細菌のtRNAは不思議がいっぱいナノだ | 全文(PDF)/紹介論文▼ | 2008/06/11 |
| keywords: nanoarchaea, tRNA splicing, RNase P |
|
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Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.
Nature. 2005 Feb 3;433(7025):537-41.
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Life without RNase P.
Nature. 2008 May 1;453(7191):120-3.
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66. | 繊毛虫の大核形成(2):Oxytrichaの場合 | 全文(PDF)/紹介論文▼ | 2008/05/09 |
| keywords: ciliate, micronucleus, macronucleus |
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RNA-mediated epigenetic programming of a genome-rearrangement pathway.
Nature. 2008 Jan 10;451(7175):153-8.
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65. | 繊毛虫の大核形成(1):Tetrahymenaの場合 | 全文(PDF)/紹介論文▼ | 2008/04/21 |
| keywords: ciliate, micronucleus, macronucleus |
|
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Programmed DNA deletion as an RNA-guided system of genome defense.
Science. 2003 Jun 6;300(5625):1581-4.
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Pdd1p, a novel chromodomain-containing protein, links heterochromatin assembly and DNA elimination in Tetrahymena.
Cell. 1996 Oct 4;87(1):75-84.
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Mol Cell. 1999 Nov;4(5):865-72.
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Mol Cell Biol. 2000 Jun;20(11):4128-34.
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Development. 1997 Nov;124(22):4537-45.
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Cell. 2002 Sep 20;110(6):701-11.
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Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1679-84.
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Genes Dev. 2007 Jun 15;21(12):1530-45.
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64. | テロメラーゼの「転移」:interstitial telomeric sequences | 全文(PDF)/紹介論文▼ | 2008/02/21 |
| keywords: telomerase, retrotransposition, telomeric repeats |
|
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Human intrachromosomal telomeric-like repeats: sequence organization and mechanisms of origin.
Chromosoma. 2001 May;110(2):75-82.
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Insertion of telomeric repeats at intrachromosomal break sites during primate evolution.
Genome Res. 2004 Sep;14(9):1704-10.
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Contribution of telomerase RNA retrotranscription to DNA double-strand break repair during mammalian genome evolution.
Genome Biol. 2007 Dec 7;8(12):R260
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63. | バルジ大作戦:tRNA splicing | 全文(PDF)/紹介論文▼ | 2008/02/08 |
| |
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In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.
RNA. 2007 May;13(5):671-81.
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Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.
Science. 2007 Oct 19;318(5849):450-3.
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62. | 自然界のウイルスベクター:polydnavirus | 全文(PDF)/紹介論文▼ | 2008/02/05 |
| keywords: polydnavirus, parasitic wasp |
|
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Polydnavirus genome: integrated vs. free virus.
J Insect Physiol. 2003 May;49(5):407-17. Review.
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Genome sequence of a polydnavirus: insights into symbiotic virus evolution.
Science. 2004 Oct 8;306(5694):286-9.
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Polydnavirus genomes reflect their dual roles as mutualists and pathogens.
Virology. 2006 Mar 30;347(1):160-74.
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61. | L1の3番目の遺伝子転移機構:template-switch | 全文(PDF)/紹介論文▼ | 2007/12/19 |
| keywords: non-LTR retrotransposon, L1, template switch |
|
- Buzdin A, Ustyugova S, Gogvadze E, Vinogradova T, Lebedev Y, Sverdlov E.
A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3' terminus of L1.
Genomics. 2002 Oct;80(4):402-6.
- Buzdin A, Gogvadze E, Kovalskaya E, Volchkov P, Ustyugova S, Illarionova A, Fushan A, Vinogradova T, Sverdlov E.
The human genome contains many types of chimeric retrogenes generated through in vivo RNA recombination.
Nucleic Acids Res. 2003 Aug 1;31(15):4385-90.
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Multiple fates of L1 retrotransposition intermediates in cultured human cells.
Mol Cell Biol. 2005 Sep;25(17):7780-95.
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Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase.
Genome Res. 2007 May;17(5):602-11.
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60. | 過去のウイルス防御の代償:TRIM5α | 全文(PDF)/紹介論文▼ | 2007/11/06 |
| keywords: TRIM5alpha, retrovirus, HIV-1 |
|
- Stremlau M, Owens CM, Perron MJ, Kiessling M, Autissier P, Sodroski J.
The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.
Nature. 2004 Feb 26;427(6977):848-53.
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Rhesus monkey TRIM5alpha restricts HIV-1 production through rapid degradation of viral Gag polyproteins.
Nat Med. 2007 May;13(5):631-5. Epub 2007 Apr 15.
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A single amino acid change in the SPRY domain of human Trim5alpha leads to HIV-1 restriction.
Curr Biol. 2005 Jan 11;15(1):73-8.
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Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain.
Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2832-7. Epub 2005 Feb 2.
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Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein.
Science. 2007 Jun 22;316(5832):1756-8.
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59. | SINEの“核”:CORE-SINE, V-SINE, Deu-SINE | 全文(PDF)/紹介論文▼ | 2007/10/23 |
| keywords: SINE, CORE-SINE, V-SINE, Deu-SINE |
|
- Gilbert N, Labuda D.
CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs.
Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):2869-74.
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V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit.
Genome Res. 2002 Feb;12(2):316-24.
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Functional noncoding sequences derived from SINEs in the mammalian genome.
Genome Res. 2006 Jul;16(7):864-74.
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58. | お隣さんとお引っ越し:L1の3' transduction | 全文(PDF)/紹介論文▼ | 2007/10/16 |
| keywords: non-LTR retrotransposon, L1 3' transduction, polyA signal |
|
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Nature. 2001 Feb 15;409(6822):860-921. Erratum in: Nature 2001 Aug 2;412(6846):565. Nature 2001 Jun 7;411(6838):720. Szustakowki, J
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A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertion.
Nat Genet. 1994 Jun;7(2):143-8.
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The evolution of an intron: analysis of a long, deletion-prone intron in the human dystrophin gene.
Genomics. 1997 Mar 1;40(2):294-304.
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Genomics. 1997 Nov 1;45(3):554-61.
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Am J Hum Genet. 2002 Aug;71(2):327-36.
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Hum Genet. 2003 Aug;113(3):268-75.
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High frequency retrotransposition in cultured mammalian cells.
Cell. 1996 Nov 29;87(5):917-27.
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Exon shuffling by L1 retrotransposition.
Science. 1999 Mar 5;283(5407):1530-4.
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Transduction of 3'-flanking sequences is common in L1 retrotransposition.
Hum Mol Genet. 2000 Mar 1;9(4):653-7.
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Frequent human genomic DNA transduction driven by LINE-1 retrotransposition.
Genome Res. 2000 Apr;10(4):411-5.
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Am J Hum Genet. 2002 Aug;71(2):312-26.
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Genome Biol. 2002 Sep 19;3(10):research0052.
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Identifying related L1 retrotransposons by analyzing 3' transduced sequences.
Genome Biol. 2003;4(5):R30.
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Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling.
Hum Mol Genet. 2003 Jun 1;12(11):1321-8.
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57. | 転移因子対策最終兵器:repeat-induced point mutation(RIP) | 全文(PDF)/紹介論文▼ | 2007/10/05 |
| keywords: RIP, Neurospora |
|
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RIP: the evolutionary cost of genome defense.
Trends Genet. 2004 Sep;20(9):417-23. Review.
|
56. | DNAポリメラーゼによるin vivoでの逆転写 | 全文(PDF)/紹介論文▼ | 2007/09/11 |
| keywords: DNA polymerase, reverse transcription |
|
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RNA-templated DNA repair.
Nature. 2007 May 17;447(7142):338-41.
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55. | テロメラーゼと勝利の女神は“エン”が無い?:AthenaとCoprina | 全文(PDF)/紹介論文▼ | 2007/07/31 |
| keywords: Penelope-like element, telomerase, reverse transcriptase, telomere |
|
- Arkhipova IR, Pyatkov KI, Meselson M, Evgen'ev MB.
Retroelements containing introns in diverse invertebrate taxa.
Nat Genet. 2003 Feb;33(2):123-4.
- Morrish TA, Garcia-Perez JL, Stamato TD, Taccioli GE, Sekiguchi J, Moran JV.
Endonuclease-independent LINE-1 retrotransposition at mammalian telomeres.
Nature. 2007 Mar 8;446(7132):208-12.
- Gladyshev EA, Arkhipova IR.
Telomere-associated endonuclease-deficient Penelope-like retroelements in diverse eukaryotes.
Proc Natl Acad Sci U S A. 2007 May 29;104(22):9352-7.
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54. | 偽まこりんのお仕事:Makorin1-p1 | 全文(PDF)/紹介論文▼ | 2007/07/24 |
| keywords: processed pseudogene, retrotransposition, non-LTR retrotransposon |
|
- Hirotsune S, Yoshida N, Chen A, Garrett L, Sugiyama F, Takahashi S, Yagami K, Wynshaw-Boris A, Yoshiki A.
An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene.
Nature. 2003 May 1;423(6935):91-6.
- Gray TA, Wilson A, Fortin PJ, Nicholls RD.
The putatively functional Mkrn1-p1 pseudogene is neither expressed nor imprinted, nor does it regulate its source gene in trans.
Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):12039-44.
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53. | 配列認識の構造基盤:L1, TRAS1, R1Bm | 全文(PDF)/紹介論文▼ | 2007/07/18 |
| keywords: non-LTR retrotransposon, apurinic-like endonuclease, L1, TRAS, R1 |
|
- Weichenrieder O, Repanas K, Perrakis A.
Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon.
Structure. 2004 Jun;12(6):975-86.
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Crystal structure of the endonuclease domain encoded by the telomere-specific long interspersed nuclear element, TRAS1.
J Biol Chem. 2004 Sep 24;279(39):41067-76.
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Sequence-specific recognition and cleavage of telomeric repeat (TTAGG)(n) by endonuclease of non-long terminal repeat retrotransposon TRAS1.
Mol Cell Biol. 2001 Jan;21(1):100-8.
- Maita N, Aoyagi H, Osanai M, Shirakawa M, Fujiwara H.
Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies.
Nucleic Acids Res. 2007 Jun 1;35(12):3918-3927.
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Retrotransposon R1Bm endonuclease cleaves the target sequence.
Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2083-8.
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52. | 塩基配列レベルの獲得免疫:CRISPR-Cas system | 全文(PDF)/紹介論文▼ | 2007/06/22 |
| keywords: CRISPR-Cas system, prokaryote, phage, plasmid |
|
- Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P.
CRISPR provides acquired resistance against viruses in prokaryotes.
Science. 2007 Mar 23;315(5819):1709-12.
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51. | テロメラーゼとnon-LTRレトロトランスポゾンの新たな接点 | 全文(PDF)/紹介論文▼ | 2007/03/14 |
| keywords: non-LTR retrotransposon, L1, endonuclease, telomere, telomerase |
|
- Morrish TA, Gilbert N, Myers JS, Vincent BJ, Stamato TD, Taccioli GE, Batzer MA, Moran JV.
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition.
Nat Genet. 2002 Jun;31(2):159-65.
- Morrish TA, Garcia-Perez JL, Stamato TD, Taccioli GE, Sekiguchi J, Moran JV.
Endonuclease-independent LINE-1 retrotransposition at mammalian telomeres.
Nature. 2007 Mar 8;446(7132):208-12.
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50. | 早くレトロウイルスになりた〜いっ | 全文(PDF)/紹介論文▼ | 2007/03/13 |
| keywords: LTR retrotransposon, envelope, env, retrovirus |
|
- Song SU, Gerasimova T, Kurkulos M, Boeke JD, Corces VG.
An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus.
Genes Dev. 1994 Sep 1;8(17):2046-57.
- Pelisson A, Song SU, Prud'homme N, Smith PA, Bucheton A, Corces VG.
Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene.
EMBO J. 1994 Sep 15;13(18):4401-11.
- Malik HS, Henikoff S, Eickbush TH.
Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses.
Genome Res. 2000 Sep;10(9):1307-18.
- Rohrmann GF, Karplus PA.
Relatedness of baculovirus and gypsy retrotransposon envelope proteins.
BMC Evol Biol. 2001;1:1.
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Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins.
Genetics. 1998 Jun;149(2):703-15.
- Wright DA, Voytas DF.
Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses.
Genome Res. 2002 Jan;12(1):122-31.
- Vicient CM, Kalendar R, Schulman AH.
Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants.
Genome Res. 2001 Dec;11(12):2041-9.
- Pantazidis A, Labrador M, Fontdevila A.
The retrotransposon Osvaldo from Drosophila buzzatii displays all structural features of a functional retrovirus.
Mol Biol Evol. 1999 Jul;16(7):909-21.
- Peterson-Burch BD, Voytas DF.
Genes of the Pseudoviridae (Ty1/copia retrotransposons).
Mol Biol Evol. 2002 Nov;19(11):1832-45.
- Laten HM, Majumdar A, Gaucher EA.
SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein.
Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6897-902.
- Bowen NJ, McDonald JF.
Genomic analysis of Caenorhabditis elegans reveals ancient families of retroviral-like elements.
Genome Res. 1999 Oct;9(10):924-35.
- Kim A, Terzian C, Santamaria P, Pelisson A, Purd'homme N, Bucheton A.
Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster.
Proc Natl Acad Sci U S A. 1994 Feb 15;91(4):1285-9.
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49. | アイはカーゴに載って | 全文(PDF)/紹介論文▼ | 2007/03/08 |
| keywords: non-LTR retrotransposon, I factor, hybrid dysgenesis |
|
- Seleme MC, Disson O, Robin S, Brun C, Teninges D, Bucheton A.
In vivo RNA localization of I factor, a non-LTR retrotransposon, requires a cis-acting signal in ORF2 and ORF1 protein.
Nucleic Acids Res. 2005 Feb 1;33(2):776-85.
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gurken and the I factor retrotransposon RNAs share common localization signals and machinery.
Dev Cell. 2005 Jul;9(1):51-62.
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48. | ウニから見つかったRAG1/2のホモログ | 全文(PDF)/紹介論文▼ | 2007/03/01 |
|
- Fugmann SD, Messier C, Novack LA, Cameron RA, Rast JP.
An ancient evolutionary origin of the Rag1/2 gene locus.
Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3728-33.
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47. | RAGという転移酵素 | 全文(PDF)/紹介論文▼ | 2007/02/22 |
|
- Zhou L, Mitra R, Atkinson PW, Hickman AB, Dyda F, Craig NL.
Transposition of hAT elements links transposable elements and V(D)J recombination.
Nature. 2004 Dec 23;432(7020):995-1001.
- Hickman AB, Perez ZN, Zhou L, Musingarimi P, Ghirlando R, Hinshaw JE, Craig NL, Dyda F.
Molecular architecture of a eukaryotic DNA transposase.
Nat Struct Mol Biol. 2005 Aug;12(8):715-21.
- Agrawal A, Eastman QM, Schatz DG.
Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system.
Nature. 1998 Aug 20;394(6695):744-51.
- Hiom K, Melek M, Gellert M.
DNA transposition by the RAG1 and RAG2 proteins: a possible source of oncogenic translocations.
Cell. 1998 Aug 21;94(4):463-70.
- Lee GS, Neiditch MB, Sinden RR, Roth DB.
Targeted transposition by the V(D)J recombinase.
Mol Cell Biol. 2002 Apr;22(7):2068-77.
- Melek M, Gellert M, van Gent DC.
Rejoining of DNA by the RAG1 and RAG2 proteins.
Science. 1998 Apr 10;280(5361):301-3.
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46. | R2タンパク質の二分業体制 | 全文(PDF)/紹介論文▼ | 2007/02/07 |
|
- Christensen S, Eickbush TH.
Footprint of the retrotransposon R2Bm protein on its target site before and after cleavage.
J Mol Biol. 2004 Mar 5;336(5):1035-45.
- Christensen SM, Eickbush TH.
R2 target-primed reverse transcription: ordered cleavage and polymerization steps by protein subunits asymmetrically bound to the target DNA.
Mol Cell Biol. 2005 Aug;25(15):6617-28.
- Christensen SM, Bibillo A, Eickbush TH.
Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction.
Nucleic Acids Res. 2005 Nov 10;33(20):6461-8.
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RNA from the 5' end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site.
Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17602-7.
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45. | TANT法でたんとトランスポゾンの挿入配列を決める | 全文(PDF)/紹介論文▼ | 2007/01/16 |
|
- Ichiyanagi K, Nakajima R, Kajikawa M, Okada N.
Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts.
Genome Res. 2007 Jan;17(1):33-41.
- Ichiyanagi K, Okada N.
Genomic alterations upon integration of zebrafish L1 elements revealed by the TANT method.
Gene. 2006 Nov 15;383:108-16.
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44. | 成熟は他人任せ:RIR-3とnMat | 全文(PDF)/紹介論文▼ | 2007/01/12 |
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- Meng Q, Wang Y, Liu XQ.
An intron-encoded protein assists RNA splicing of multiple similar introns of different bacterial genes.
J Biol Chem. 2005 Oct 21;280(42):35085-8.
- Mohr G, Lambowitz AM.
Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in higher plants.
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43. | RNAi機構は本当に転移因子を抑制するか?:ショウジョウバエを例に | 全文(PDF)/紹介論文▼ | 2006/12/21 |
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42. | L1 Gives You Wings:Aluとprocessed pseudogene | 全文(PDF)/紹介論文▼ | 2006/12/07 |
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41. | 哺乳類で生まれたリボザイム?:CPEB3リボザイム | 全文(PDF)/紹介論文▼ | 2006/12/05 |
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40. | 細胞内共生細菌の終着点:そしてオルガネラにならない? | 全文(PDF)/紹介論文▼ | 2006/11/30 |
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39. | L1の転写減衰と遺伝子の発現制御 | 全文(PDF)/紹介論文▼ | 2006/11/28 |
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38. | rRNAとの共転写の役割:R1とR2 | 全文(PDF)/紹介論文▼ | 2006/11/22 |
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37. | 2006年ノーベル医学生理学賞:RNAi | 全文(PDF)/紹介論文▼ | 2006/10/24 |
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36. | リボソームDNAの中の居心地は?:R1とR2 | 全文(PDF)/紹介論文▼ | 2006/10/17 |
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35. | 投げ縄と鋏は使いよう:GIR1とTy1 | 全文(PDF)/紹介論文▼ | 2006/10/11 |
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34. | レトロトランスポゾンと遺伝するエピジェネティクス | 全文(PDF)/紹介論文▼ | 2006/10/02 |
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33. | 簡単お手軽RNAiのひみつ:SID-1 | 全文(PDF)/紹介論文▼ | 2006/09/28 |
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32. | ブタ箱の中のDNAトランスポゾン:Pokey | 全文(PDF)/紹介論文▼ | 2006/09/20 |
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31. | 昆虫のテロメア維持機構(4):テロメラーゼ | 全文(PDF)/紹介論文▼ | 2006/09/13 (2007/01/10加筆) |
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30. | SINEと高度保存配列と外適応(Exaptation) | 全文(PDF)/紹介論文▼ | 2006/08/11 |
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29. | 昆虫のテロメア維持機構(3):蠅のテロメア | 全文(PDF)/紹介論文▼ | 2006/08/08 |
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28. | 昆虫のテロメア維持機構(2):蚊のテロメア | 全文(PDF)/紹介論文▼ | 2006/08/08 |
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27. | ホーミングエンドヌクレアーゼの配列特異性の改変 | 全文(PDF)/紹介論文▼ | 2006/07/24 |
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26. | ホーミングエンドヌクレアーゼとlocalized marker exclusion | 全文(PDF)/紹介論文▼ | 2006/07/18 |
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25. | 昆虫のテロメア維持機構(1):テロメア反復配列 | 全文(PDF)/紹介論文▼ | 2006/07/18 |
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24. | LTRのないLTRレトロトランスポゾン:DIRS、PAT、Ngaro、VIPER | 全文(PDF)/紹介論文▼ | 2006/06/29 |
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23. | 原核生物のテロメラーゼ:protelomerase | 全文(PDF)/紹介論文▼ | 2006/06/29 |
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22. | SINE/LINEの挿入と哺乳類の系統解析 | 全文(PDF)/紹介論文▼ | 2006/06/02 (2006/07/05加筆) |
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20. | non-LTRレトロトランスポゾンによるDNA修復?:L1とL1Tc | 全文(PDF)/紹介論文▼ | 2006/04/20 |
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19. | レトロトランスポゾンからインテグラーゼを獲得した巨大転移因子:Polinton | 全文(PDF)/紹介論文▼ | 2006/04/12 |
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18. | 寄生因子とその寄生因子:LINEとSINE | 全文(PDF)/紹介論文▼ | 2006/04/12 |
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17. | Non-LTRレトロトランスポゾンの翻訳戦略:1本のRNAから2種類の蛋白質 | 全文(PDF)/紹介論文▼ | 2006/03/06 (2006/03/10加筆) |
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16. | サンドイッチ反復配列:CRISPR | 全文(PDF)/紹介論文▼ | 2006/01/20 |
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Identification of genes that are associated with DNA repeats in prokaryotes.
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Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements.
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CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.
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15. | 殺虫剤耐性とトランスポゾン | 全文(PDF)/紹介論文▼ | 2006/01/17 |
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14. | 逆転写酵素が感染を防ぐ?:Abortive infection | 全文(PDF)/紹介論文▼ | 2006/01/13 (2006/07/11加筆) |
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13. | 胎盤とレトロエレメントの不思議な関係:syncytinとPeg10 | 全文(PDF)/紹介論文▼ | 2006/01/12 |
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Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality.
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12. | もう一つの獲得免疫系:Variable lymphocyte receptors | 全文(PDF)/紹介論文▼ | 2006/01/06 (2007/02/19加筆) |
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Antigen-receptor genes of the agnathan lamprey are assembled by a process involving copy choice.
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11. | 哺乳類におけるトランスポゾンの利用:Sleeping BeautyとpiggyBac | 全文(PDF)/紹介論文▼ | 2006/01/06 |
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10. | 原核生物の遺伝子水平移動と可動性遺伝因子 | 全文(PDF)/紹介論文▼ | 2005/12/28 |
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9. | 大規模配列決定の新技術:Pyrosequencingを中心として | 全文(PDF)/紹介論文▼ | 2005/12/26 |
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Pyrosequencing sheds light on DNA sequencing.
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8. | レトロエレメントのマイナーグループ:Retroplasmid | 全文(PDF)/紹介論文▼ | 2005/10/07 |
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7. | レトロトランスポゾンの3つ目のグループ:Penelope-like elements(PLEs) | 全文(PDF)/紹介論文▼ | 2005/08/09 |
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6. | 二刀流のnon-LTRレトロトランスポゾン:Dualen |
全文(PDF)/紹介論文▼ | 2005/08/05 |
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An extraordinary retrotransposon family encoding dual endonucleases.
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5. | チロシンリコンビナーゼを持つ真核性転移因子:TecとCrypton | 全文(PDF)/紹介論文▼ | 2005/07/29 |
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Selection on the genes of Euplotes crassus Tec1 and Tec2 transposons: evolutionary appearance of a programmed frameshift in a Tec2 gene encoding a tyrosine family site-specific recombinase.
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Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi.
Microbiology. 2003 Nov;149(Pt 11):3099-3109.
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4. | 細菌よりも大きなウイルス:mimivirus | 全文(PDF)/紹介論文▼ | 2005/07/28 |
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A giant virus in amoebae.
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The 1.2-megabase genome sequence of Mimivirus.
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3. | ローリング・ポゾーンズ?:IS91とHelitron | 全文(PDF)/紹介論文▼ | 2005/07/14 |
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IS91 rolling-circle transposition
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2. | 免疫系はトランスポゾンが作った?:TransibとRAG1 | 全文(PDF)/紹介論文▼ | 2005/07/11 |
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1. | 新しくて古いレトロエレメント:Diversity-generating retroelement | 全文(PDF)/紹介論文▼ | 2005/07/07 |
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Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage.
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Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements.
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Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes.
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