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July 3, 2017
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Perl, R, CGI, EnsemblAPI(1,2), BioPerl, UnixTips, LinuxTips, ƒVƒFƒ‹ƒXƒNƒŠƒvƒg, ˆ³kE•ÏŠ·, Emacs, Ruby, Programs.pl, C, C++, SSH(Mac), WinSCP, ƒRƒ}ƒ“ƒhƒvƒƒ“ƒvƒg, mule, Maple, ‰ðÍƒpƒCƒvƒ‰ƒCƒ“, Cyberduck, Python,

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•ª—Þ NCBI, Know tree \’z, FishBase, UODAS, Catalog of Fishes, ARB, PAST,Papers, SENTE, MENDELEY, Tree of Sex, TogoPictureGallary, DistanceCal, WoRMS, shark-references, SeaUrchin”­Œ»C
Nuc Genome

Ensembl, Entrez_Nuc,UCSC, HOVERGEN, RefSeq, CCDS, KEGG, TogoGenome, FishOrthoDB,
Annotation: BLAST2GO,
Structure: Intron,
Synteny: SyntenyDB, Genomicus,
Karyotype: GenomeSize,
Orthology: PhylomeDB, TreeFam, phylomarker, SPIMAP,
GeneOntology: DAVID, HGNC, BioMart,
Project: GOLD, NHGRI,
Species: EeelBase,
Other: DDBJ“o˜^,

Mt Genome NCBI: Metazoa, Vertebrata, Actinopterygii, Mammalia, Archosauria, Amphibia, Lepidosauria
MitoFish, OGRe, MITOMAP, PDB, mtDB, mtSNP, MITOS,
‰»Î Paleobiology Database, Fossil Calibration Database, Fossil Calibration Database,
ŒÃ’n}ì¬ ODSN, PALEOMAP, PLATES, GMAP,
’nŽ¿”N‘ã•\ L‘åE’n‹…Ž‘Œ¹˜_Œ¤, Geologic Time Scale, WP
“®•¨‚̉摜 Animal Diversity Web, Tree of life, Ukiyoe, Chondrichthyes,
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EndNote, TreeBASE, Tree of life, Œn“˜_•¶ƒŠƒXƒg, BOLDSYSTEMS, SendaFile, Togo pics, TIMETREE,
ƒ|ƒXƒhƒNEŒŸõ, PDFì¬, ŠCŠO—·s, Acrobat, DRYAD,

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‘‡ƒTƒCƒg “‡TV, Phylogeny Programs, EMBOSS, •ªŽqŒn“Šw‰‰K, Œn“Ž÷ì¬,
ƒf[ƒ^ƒ}ƒCƒjƒ“ƒO‚È‚Ç Local Blast, BLAST+, BLAST, blat, ˆâ“`Žq‚̐؂èo‚µ, aLeaves, GGGenome, fasta, Hammer,
ƒAƒbƒZƒ“ƒuƒ‹ Trinity, Newbler, Velvet, EGassembler, CAP3, minimus, Trimmomatic, FastQC, NGS Surfer's Wiki, gVolante,
Gene prediction Augustus, GENESCAN,
ƒAƒ‰ƒCƒƒ“ƒg MAFFT, trimAl,ProAlign, ClustalW,PRANK, MUSCLE,Gblocks,TranslatorX, Translation Align,
PAL2NAL, ESTScan, cDNAalign, LASTZ, VISTA, Murasaki,
ŽY•¨‚̍\‘¢ HMMTOP, SOSUI, ƒAƒ~ƒmŽ_‚̐«Ž¿, RNA,
ƒV[ƒPƒ“ƒXƒGƒfƒBƒ^[ Mesquite, MacClade, Se-Al, BioEdit(Win), SeaView, MEGA,
ƒ‚ƒfƒ‹E‰¼à‚Ì•]‰¿ Modeltest, MrModeltest, Kakusan,
”z—ñ‰ðÍ PAML, codeml, HyPhy, SeqVis,treeSAAP, PartitionFinder,
MP, ML, NJ tree ’Tõ RAxML, PAUP, Tree-Puzzle, Phylip, phylip web, GARLI,PhyML, MOLPHY, Treefinder, TNT(Œ`‘Ô), IQ-TREE,
ƒxƒCƒY tree ’Tõ MrBayes, AWTY, Tracer, TreeStat
Coalescent theory MPEST, STRAW,
Phylogenomics ExaML,
‘Š‘Α¬“xƒeƒXƒg LINTRE, Phyltest
•ªŠò”N‘㐄’è mcmctree, multidistribute, Thornian Time Traveller, r8s, BEAST, IRDIVTIME,PhyloBayes, §–ñ‚Ì‘I‚Ñ•û, MEGA,
Œn“Ž÷‚Ì•\Ž¦E”äŠr FigTree, TreeView, TreeStat, Dendroscope,
evolver, TREEDIST, XCED, Notung, blCal, treeYB, NJplot, BUCKy, TreeGraph2, CONCATERPILLAR,
ƒVƒ“ƒeƒj[‰ðÍ CIRCOS, SyMAP, i-ADHoRe,
‘cæŒ`Ž¿‚̐„’è Mesquite, BayesTraits, SIMMAP
W’cˆâ“`Šw PSMC,
Supercomputer HGC, SGE, SLURM, UCL, AORI,Šî”ÕƒZƒ“ƒ^,
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Mac BBEdit, mi ‚Ɛ³‹K•\Œ», TextWrangler, CPP Edit, textmate, ATOM, VisualStudioCode,
Win TeraPad, Sakura, GŠÛ, xyzzy,
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‰p•¶ì¬, Oxford, ƒAƒ‹ƒN, weblio(‰pŒêC—Þ‹`Œê), Logophile, BNEnglish, ”÷•ª, WordRefCƒMƒŠƒVƒƒ•¶Žš, Nature, thesaurus,

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Statistics Calculators, skew_Cauchy, keisan, Fisher's exact test, graphTK, PlymouthUniv, biopapyrus,
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